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Answer by orbeckst for How to instantiate Atoms using MDAnalysis?
You can create a new Universe with empty atoms with the Universe.empty() method. In the following example I am using example files from the tests (data.PSF and data.DCD but you can use your own...
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After looking over the documentation a few times and spending a handful of hours trying various ideas, I've decided I need a hand. I'm writing Python software that steps through NAMD simulations of...
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